PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001432G0330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 391aa    MW: 42323.4 Da    PI: 6.0537
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001432G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.84.8e-071551862655
              AP2  26 g..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      g  + k+++lg f+ta  Aa+a+++a+ k++g
  PH01001432G0330 155 GrdCGKQVYLGGFDTAHAAARAYDRAAIKFRG 186
                      34445************************998 PP

2AP241.82.7e-13229279155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  PH01001432G0330 229 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAAIRFNG 279
                      89********.7******...5...334336**********99**********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.194114194IPR001471AP2/ERF domain
SMARTSM003801.4E-13154200IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-9158195IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-11159195IPR001471AP2/ERF domain
CDDcd000188.60E-27229289No hitNo description
PfamPF008478.0E-9229279IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16229288IPR016177DNA-binding domain
SMARTSM003807.0E-33230293IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-15230287IPR001471AP2/ERF domain
PROSITE profilePS5103216.041230287IPR001471AP2/ERF domain
PRINTSPR003671.1E-5231242IPR001471AP2/ERF domain
PRINTSPR003671.1E-5269289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVLDLNVASP ADSGTSSSSV LNSGDAGAGG FRFGLLGSPD DENCSGELAP VATGIVTRQL  60
LPPPGGAGAG PCVAAAPCRG SRRGAEGGGR EEDPARPEVA ELAVQGRHLL PEDGPVGVAH  120
LVSLWPRLPR DWLPLIRICL AYQTINRLLL PSNSGRDCGK QVYLGGFDTA HAAARAYDRA  180
AIKFRGLDAD INFNLSDYEE DLKQMRNWTK EEFVHILRRQ STGFARGSSK YRGVTLHKCG  240
RWEARMGQLL GKKYIYLGLF DSEVEAARAY DRAAIRFNGR ETVTNFEPSS YNGDALPDTE  300
NEVVDADVLD LDLRISQPNM HDYKRDNIIA GLQLTCDSPE SSSTTVSQPL SSSSQWPVHH  360
QSTAVPSQHQ RLYSSACPGF FPNLQILFPL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851130.0AY685113.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D2 (AP2D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981271.11e-159PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
TrEMBLQ5Y3831e-159Q5Y383_9POAL; Floral homeotic protein
STRINGOB03G45870.11e-155(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-71related to AP2.7